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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs10169267 chr2:228078918 A/G 0 407 15.72 13.23 1.23 KM Plot
LGG rs10169268 chr2:228078920 A/G 0 407 15.72 13.23 1.23 KM Plot
LGG rs10183514 chr2:228076530 C/T 0 406 15.72 14.43 1.23 KM Plot
LGG rs10185726 chr2:207073034 A/G 0 398 3.2 16.77 15.17 KM Plot
LGG rs10193670 chr2:228079486 G/A 0 407 15.72 13.23 1.23 KM Plot
LGG rs10194778 chr2:228081221 T/C 0 407 15.72 13.23 1.23 KM Plot
LGG rs10198580 chr2:228076662 T/C 0 406 15.72 14.43 1.23 KM Plot
LGG rs10205764 chr2:228079247 A/T 0 407 1.23 12.03 15.73 KM Plot
LGG rs10205773 chr2:228079281 T/C 0 407 15.72 13.23 1.23 KM Plot
LGG rs1038438 chr3:100920330 A/C 4.78E-5 405 15.72 14.87 12.77 KM Plot
LGG rs1040461 chr6:57055354 C/T 3.29E-6 404 15.33 15.43 7.8 KM Plot
LGG rs10431453 chr12:102133391 G/A 3.18E-5 402 13.85 19.33 21.25 KM Plot
LGG rs1044836 chr2:114464777 C/T 0 405 15.5 15.08 0.23 KM Plot
LGG rs10491795 chr9:24113907 C/T 2.52E-9 407 15.37 12.4 17.07 KM Plot
LGG rs10508208 chr10:910983 C/T 4.78E-6 407 15.13 17.38 10.57 KM Plot